PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75524.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 275aa    MW: 30299.2 Da    PI: 9.0384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75524.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49611921129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat+ g+Wkatg+dk+++ 
  MLOC_75524.3  61 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQEccRIGTgPQNDWYLFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYP 156
                   69****************************.9***************963444443456*************************************9 PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   + +  ++g++ktLvfy+grap+g+k+dW+mheyrle
  MLOC_75524.3 157 AaGYGHIGMRKTLVFYQGRAPHGHKSDWIMHEYRLE 192
                   867778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5451201IPR003441NAC domain
PROSITE profilePS5100553.71561242IPR003441NAC domain
PfamPF023652.4E-2662191IPR003441NAC domain
SuperFamilySSF1019412.22E-54230242IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAPDVLAPLP PISLSLPSQV VSLYPITGNN FIPVDPTPSS PLHYCTTRSI MSISVNGQSV  60
VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQECC RIGTGPQNDW  120
YLFSHKDKKY PTGTRTNRAT TVGFWKATGR DKAIYPAAGY GHIGMRKTLV FYQGRAPHGH  180
KSDWIMHEYR LEDATTPGNN PANRAIGNAP YYPGSSSSIR SVVGDQSSAQ EDGWVICRVF  240
KKKNIVVQQQ ADQNGGGRRT ASNNLVAAGA IELSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-456124415170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678010.0AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147319.11e-105NAM protein
SwissprotQ84WP62e-91NAC43_ARATH; NAC domain-containing protein 43
TrEMBLM0Z1R10.0M0Z1R1_HORVD; Uncharacterized protein
STRINGMLOC_75524.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-92NAC family protein